Plant GARDEN
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TOP > About the Species(Nicotiana tabacum var. TN90) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Nicotiana tabacum

CDS Sequence

CDS ID

lcl|NW_015903591.1_cds_XP_016453678.1_47779
CDS Infomation

[gene=LOC107778015] [db_xref=GeneID:107778015] [protein=ERAD-associated E3 ubiquitin-protein ligase HRD1B-like isoform X2] [protein_id=XP_016453678.1] [location=join(18904..19436,20147..20323,20483..20632,20720..20910,24865..25018,25741..25846,26339..26479)] [gbkey=CDS]
Sequence

ATGATGAGACTACAAACTTATGCGGGGCTTAGTGTAATAGCTACACTAGCTGCTATTTAT
CATGCCTTCAGCAGTAGAGGCCAGTTTTACCCAGCAATGGTTTATTTATCGACATCTAAG
ATCAGTCTGGTGCTTCTCCTCAACATGGCTCTCGCCATTATGTGCATTTTATGGCAACTA
ACCAAGAAAGTTTTCCTTGGTACTCTTCGGGAGGCAGAGGCGGAGAGGCTAAATGAACAA
TCATGGCGGGAACTCATGGAAATACTTTTTGCAATTACTATTTTCCGGCAAGACTTCTCT
GTGATGTTTCTTGCCATGGTTACCGGCCTATTGTTTATCAAGTCTTTGCATTGGTTGGCT
CAGAAACGGGTTGAGCATATTGAAACAACTCCAGCGGTTACTAAGTTGTCCCACATTCGA
ATAGTCTCTTTCATGGGCTTCCTCCTCCTCATTGATAGTATCTTTTTGTACAACTACATG
AACCATTTGATACAGACAAGACATGCTTCTGTTTCTCTCTTCTTTGCATTTGAGTACATG
ATACTCACTACAACAACTGTTGCAACATTCGTGAAATATGTATTCCATGTATGTGACATG
CTTATGGAAGGACAATGGGAGAGGAAGGCTGTATATACTTTCTACTTGGAGCTTATTCGG
GACTTGCTCCACTTGACTATGTACATGTGCTTCTTCCTCATGATTTTCATCAATTATGGT
GTGCCTCTGCACTTGATTCGGGAACTTTATGAGACATTCCGCAACTTCAAGAGTCGAGTT
GCTGACTACATACGCTATCGAAAAGTCACCTCAAACATGAATGATCTTTTTCCAGAGGCT
ACACCGGAAGAGCTCAATGGAGGTGATACCATCTGTATCATTTGTCGTGAGGAGATGACC
ACTGCCAAGAAACTTGTTTGTGGACATCTCTTTCATGTTAATTGCCTCCGGTCATGGCTA
GAACGTCAGCACACATGTCCTACATGCAGAGCCCTTGTTGTACCACCTGAAAATGGGACG
AATGTTGCAGGATCTCGATATGCTCAGCAAGGCCCAGGAACAAGTTTTACACCTCAAGGT
TCTCAAGCAGATCCCAGGACAAACAGCCATGTTAGCCAGCACCAGGCTAGACTCCAAGCT
GCAGCAGCAGCTGCTGCAATTTATGAGAAGTCCATTGTTTATCCTTCTGCACAGATGCTA
CCCTGCTATCTTGGTGCTAACATGCCTTTTGGAGATAGTTCTTGGAACAACCTTAGTACT
TCAGATACTCAACTCGAGGCCCATAGGATATCCTTACAGCAGCAGATTGAGATTCTGCGA
AGCCAGCTCACGCTTCTACAGAGTTCAAAGACACAGAGAGCAGCTGCTGCGGTAGGAGCT
TCAGATGGCAAGGGAAAAGCAATTTCGTTTGAGAGTGCTCAGAAAGGACAGGCTGAAGGT
GCAGATATTTAA

Peptide Sequence

PEP ID

XP_016453678.1
PEP Infomation

PREDICTED: ERAD-associated E3 ubiquitin-protein ligase HRD1B-like isoform X2 [Nicotiana tabacum]
Sequence

MMRLQTYAGLSVIATLAAIYHAFSSRGQFYPAMVYLSTSKISLVLLLNMALAIMCILWQL
TKKVFLGTLREAEAERLNEQSWRELMEILFAITIFRQDFSVMFLAMVTGLLFIKSLHWLA
QKRVEHIETTPAVTKLSHIRIVSFMGFLLLIDSIFLYNYMNHLIQTRHASVSLFFAFEYM
ILTTTTVATFVKYVFHVCDMLMEGQWERKAVYTFYLELIRDLLHLTMYMCFFLMIFINYG
VPLHLIRELYETFRNFKSRVADYIRYRKVTSNMNDLFPEATPEELNGGDTICIICREEMT
TAKKLVCGHLFHVNCLRSWLERQHTCPTCRALVVPPENGTNVAGSRYAQQGPGTSFTPQG
SQADPRTNSHVSQHQARLQAAAAAAAIYEKSIVYPSAQMLPCYLGANMPFGDSSWNNLST
SDTQLEAHRISLQQQIEILRSQLTLLQSSKTQRAAAAVGASDGKGKAISFESAQKGQAEG
ADI

Transcript Sequence

Gene sequence data has not been registered.